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Introducing Skymap-JHub: accessing omics from >400,000 sequencing runs made simple
Last edited by brianytsui; 10-18-2018, 12:16 AM. -
WGS and RNA-seq integrated in analysis of expression
I need to find some publications about an analysis of the diversity of gene expression based on WGS and RNA-Seq.
I would like to sequent... -
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, USA
General Summary/ Overview Statement
https://partners.taleo.net/careersec...tl?job=3038637
The Systems Biology... -
Baits in WGS???
Hi,
Capture baits are used for exome sequencing in WES. Are baits used for whole genome sequencing. Or, is sequencing randomly primed... -
Extracting HLA-E allele sequences from BAM for gene editing
I have WGS data (2x100bp) that has been aligned to hg19. Using HLA-VBSeq, I HLA typed the data, and now the researcher I am working with is interested... -
Human (NA12878) WGS on Minion: data available
Using multiple runs and flow cells ~20x coverage of the NA12878 genome was generated. The data is available and can be found (along with more information)... -
fastq.gz size for human WGS coverage calculation
I have got 3 pair fastq.gz file of human WGS, the size are 3.9 + 4.2, 1.7 + 1.8, 1.5 + 1.6 respectively, how to calculate coverage of these results. ...Last edited by yipukangda; 11-07-2016, 09:22 PM. -
Searching for specific sequences in WGS data
Hi everyone.
I have never worked with WGS data and have a question. I have several thousands of sequences that I can convert in any format... -
New metagenomics analysis platform: Nephele
I think many of you could benefit from using this new tool for Metagenomics data analysis (16S, ITS, WGS) created in NIAID/NIH.
Misner I, Dommer... -
20K Internal Control
I'm aware of the 2K PacBio Internal Control -- but smaller inserts function to control different things and tend to represent the best-case scenario (loading... -
Comparative bacterial genomics on groups of samples
Here is my project:
- I have a group X of unknown strains of species A taken from, say, the oral cavities of a group of people. Each individual...Last edited by feralBiologist; 02-11-2016, 02:53 AM. -
Nephele:cloud-based microbiome analysis tool for 16S and WGS data
NIAID has announced the public launch of Nephele for your microbiome analysis needs.
Why Use Nephele? Nephele is designed to be a no-hassle, powerful... -
Enriched mapping on WGS Illumina data
Hi,
I am working on WGS illumina data (100PE) and noticed that some genomics regions have enriched reads mapping than others. I had worked... -
Strange VAF distribution across SNP positions in WGS sample
Hi everyone,
I have a germline sample that underwent whole genome sequencing at 30x on Illumina Hiseq. After extracting the VAFs at all... -
Help: Gene Copy Number for individual organism (not CNV)
Greetings!
I am trying to determine the copy number of certain genes found in an individual organism (i.e. how many copies does an organism have...Last edited by IKnowNothing; 10-11-2015, 06:17 PM.
