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  • Joseph White
    Junior Member
    • Jun 2016
    • 8

    Baits in WGS???

    Hi,

    Capture baits are used for exome sequencing in WES. Are baits used for whole genome sequencing. Or, is sequencing randomly primed for WGS?

    Thanks for any info.
    Cheers,
    jwhite
  • nucacidhunter
    Jafar Jabbari
    • Jan 2013
    • 1250

    #2
    Common method for WGS library prep is ligating adapters to randomly sheared DNA. There are also less common methods such as tagmentation that involves less randomly cutting DNA and inserting a sequence overhang for subsequent PCR amplification. Although technically incorrect, you can think of these methods as randomly primed sequencing.

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    • GATTACAT
      Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
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      Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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    • SEQadmin2
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