Hello,
I want to use IGV to see my GAIIx data (CASAVA v1.8). I import my bam files(.bam and .bam.bai) in IGV. I have to use a different...
54 results in 0.0026 seconds.
-
IGV - Genome problems
-
loading bam file failure on IGV
Hi everyone,
I tried to find the reason for a long time. But couldn't solve my problem.
When loading my sorted bam file (with bai... -
Adding Cuffdiff support to IGV
I'm looking to add direct support for an RNA-Seq pipeline (Tophat->Cufflinks->Cuffdiff) to the IGV genome browser so would be interested in getting... -
Visualization of variants from varScan with IGV
Hi all,
I visualized the variant positions I got from varScan using IGV.
I saw that they show different coverage from what I have... -
IGV: display six-frame (amino-acid) translation of reference genome?
In IGV, is it possible to display the six-frame (amino-acid) translation of the reference genome?
That would be helpful for assessing the... -
Displaying DGE (bed-files) with Integrative Genomics Viewer
I have digital gene expression data in bed-format.
One type of file would be bed-files where each entry corresponds to one sequenced tag.... -
Viewing Tophat results in IGV
Hello everybody,
I have 120 sequence read files (76bp illumina reads) that I have converted into fastq format and wish to use in Tophat...Last edited by SEQquestions; 02-02-2010, 11:26 PM. -
Hello from Boston (IGV creator)
Hi, I'm the creator if IGV (Integrative Genomics Viewer) and am joining the forum to keep abreast of active issues, takes suggestions from this community,... -
MAQGene -> SAMTools -> IGV
Hi everybody !!!!
We want to use this 3 programs (MAQGene -> SAMTools -> IGV) to display a lot of fragments of a mutant sequence...
