Quality Control, Read Mapping, Visualization and DNA Variant Analysis
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15 results in 0.0021 seconds.
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Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
Online Course - A Practical Introduction to NGS Data Analysis
Quality Control, Read Mapping, Visualization and DNA Variant Analysis
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Program to view multiple alignment files at once
I have aligned reads to a database containing 10 reference sequences using BWA MEM, and now have .sam and .bam files.
Is there a program... -
Real Beginner Guide to NGS
Hello all,
I'm really a beginner in Bioinformatics. I start study about Bioinformatics, especially in NGS like 2-3 weeks ago. What I already... -
To locate some introgressed QTL regions of an assembly?
I need to locate some introgressed QTL regions of an assembly (resulted from backcrossing) to analyze those regions further. I have SSR marker sequences... -
Which tool should I use to summarize counts from BWA-mem?
From what I read, BWA-mem is one of the best alignment tools (at least for de novo transcriptomes).
However, it seems that summarization... -
What tool can align a ton of NGS data from a large region to a tiny reference?
Hi all,
I have NGS data from a patient: Genomic DNA fragments ranging from 300-600bp sequenced on the MiSeq (2x250bp reads) prepared with... -
BWA - Why giving only one match per read ?
I am doing experiments with BWA and BowTie. Now, I am finding alignments using command:
./bwa aln -n 0 -k 41 database.fa SRR4493095_1.fastq... -
BWA sampe problem
Hi,
Having trouble figuring out what I have done wrong to make BWA sampe give me a mess instead of a functional SAM file. The raw data... -
Alignment of multiplexed fragment samples (SOLiD)
Hello!
We are using a SOLiD4 and we would like to sequence
10 multiplexed (marked) patients á 90 fragments á 200-300 bp.
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bowtie error
hi all,
I am trying to use Bowtie to align paired end sequencing data from solexa, I made indexfiles, and run bowtie for my files by this...Last edited by jamal; 10-06-2010, 06:27 AM. -
Comparison of sequence alignment tools
I am dealing with aligning sequences from next-gen sources to a reference genome. I came across this great site
http://seqanswers.com/forums/... -
Hello All~
Hello Everyone,
I have started my job on the bioinformatic analysis , mostly on alignment and transcriptome analysis.I am pleased to communicate... -
Best tool for the job (noob question)
What are the best tools for aligning a query against a target with the following characteristics? I had previously tried bowtie but only got 6% alignment...Last edited by bre; 01-05-2010, 10:43 AM. -
BFAST published
The paper describing the algorithm behind BFAST has now been published.
Homer N, Merriman B, Nelson SF.
BFAST: An alignment tool... -
Very Short Read aligner
Hi All,
I am in process of building my own short read aligner for a lab working with cancer-genome sequencing. And have following questions:...
