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statsteam started a topic tophat2 some parameters are not working (--no-novel-indels and -a)

in Bioinformatics

05-28-2014, 03:43 PM
tophat2 some parameters are not working (--no-novel-indels and -a)

I used tophat2 to map reads with --no-novel-indels and -a 6 parameters. Once the mapping is done, I examined the result (accepted_hits.bam) and found...

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Last edited by statsteam; 05-28-2014, 03:48 PM. Reason: putting a correct example for anchor length <6
statsteam started a topic TopHat questions

in Bioinformatics

11-04-2009, 12:08 PM
TopHat questions

Hi,

I have a few general questions.

I am planning to do the junction mapping using 76bp reads.

What is the...

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