Hello, I am very new to Bioinformatics and coding, so any help is appreciated.
I have run into an issue early one using the quick start...
26 results in 0.0028 seconds.
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ANNOVAR quick start up guide
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Annovar Annotation for CanFam3
Dear community members,
I am currently trying my luck with the tool called ANNOVAR in my attempt to filter out my huge data of SNP called... -
some variants disappear after bcftools norm
Hello,
I noticed that when performing left-normalization on my vcf file (as suggested by Annovar at http://annovar.openbioinformatics.... -
annovar multi-thread option syntax error
I am trying to use the muli-threading option in annovar and not having any luck. Both of my attempts below have yielded syntax errors. I am not sure... -
Annovar no such file or directory
Hi everyone,
I'm new to Annovar so I tried to follow the Quick Start-Up Guide for table_annovar program.
Specifically I... -
annovar filter based annotation
Hi,
i want to know if someone know the meaning of "." in SIFT score, LRT score etc.. I don't find any explanation in Annovar website... -
Annovar and variants with a MAF = 1 in fileterd file
Hi,
I'm a new user of annovar.
When I filter with 1000 genomes database using the following command:
perl annotate_variation.pl... -
Variant annotation- uanble to get HGVS Nomenclature for intronic region
Hello All,
I am trying to annotate my variants. I am finding it hard to annotate my intronic regions (+/- 10bp from the exonic region).... -
ANNOVAR reporting the depth score
Hello.
I am using ANNOVAR and have successfully created the .avinput files for my vcf files correctly. If I examine the .avinput, the... -
ANNOVAR Blank Entries
hello. thank you in advance.
I have a question for those using ANNOVAR. I am using ANNOVAR of several gene annotations and filter based... -
[Annovar] Annotate SNPs in Samples
Hi All,
I want to annotate the SNPs in my data samples via Annovar. But there are so many databases, and parameters, that I'm a little... -
annovar error with table_annovar.pl line 214
Hi, guys. I'm a newer for using the annovar. Now I meet a problem which makes me going crazy. Please do me a favor. Thank you very much!
... -
Visualize variants annotated with ANNOVAR
Hey all,
I'm developing a pipeline for NGS data analysis. I'm pretty much ok with the steps up to variant calling (I'm using GATK for that)... -
ANNOVAR refGene annotation error
Hello. Thank you in advance, I successfully ran ANNOVAR, but have a question regarding the NOTICE from the output, and wish to understand.
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Annovar annotation with refSeqSummary and refLink
Dear all,
I am currently struggling with annotation options in Annovar.
I have paired tumor normal exome sequencing data for which...
