Sorry, I'm new in the field and this may seem like a silly question but I need your help.
How do polyploid genomes (triploid, tetraploid,...
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Polyploid Assemblers
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Advice on assembling very large metagenomic dataset?
I need to assemble a large metagenomics dataset from Illumina NextSeq reads. My read depth is approximately 20 million reads per sample (28 samples)...Last edited by jol.espinoz; 03-01-2017, 12:16 PM. -
MetaVelvet crashes, no error given
Hello everyone,
I'm currently experimenting with different assembly programs with a small metagenomic dataset (~4 million reads) and I... -
Soap denovo input files in contig file from FLASH
I am using Soap denovo for whole genome assembly. I have use trimmonatic and Flash to trim and merge my reads. Flash spits out 4 output files. My question... -
Best Assembler for Metagenome Assembly
Hii All,
I have couple of questions regarding metagenomic assembly..
1. What is the best assembler (open source please!!)... -
which denovo assemble to use for assembly of meta-transcriptome data
Hi,
I have couple of questions.
Firstly, I am looking for a denovo assembly tool that can assemble a meta-transcriptome... -
SOAPdenovotrans file read error
I am trying to assemble paired read illumina data using the config file:
[LIB]
max_rd_len=100
asm_flags=3
rank=1... -
What's the best assembler for 454 reads?
Hi,
I would like to know what is the best assembler for 454 reads (Free software, if possible)?
I'll sequence viral genomes and... -
de novo transcriptome assembly
Hi,
I am new to this firld og NGS data analysis. I have just started working with de novo transcriptome assembly and came across many assemblers... -
CoComputational Resources on Assembling Genomes
Dear Colleagues, I am scientist ( http://www.imtech.res.in/raghava/ ) working in the field of Bioinformatics, we are interested to assist the scientific...
