Hi all
I recently made ATAC-seq libraries on two new cancer cell lines and I don't see nucleosomal pattern as I used to see in my previous library....
12 results in 0.0058 seconds.
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ATAC-seq library fragment size troubleshooting
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Sequencing Human/Mouse ATAC libraries together?
Hi all,
I am a novice to this and currently preparing mouse and human ATAC libraries. All samples are on different barcodes and we want... -
ATAC Library from ffpe
Hi all,
Does anyone has an example of bioanalyzer traces of ATAC libraries prepared from ffpe?
Thank you!
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Is my ATACseq library okay?
We are new to ATAC-Seq. We have performed library validation and several of our samples have produced results similar to those in the image attached.... -
Balance sequencing runs ATAC
I am having trouble balancing my sequencing runs for ATAC-seq. I am doing extensive kapa on the samples but often finding one out of a pool of 6 will... -
Can't sequence ATAC-Seq libraries
We have prepared ATAC libraries for 24 samples following the protocol from Buenrostro et.al, using their custom Nextera-like primers and we have attempted... -
ATAC-seq small / overdigested fragments?
Hi all,
First, I hope that the ATAC-Family will grow further to share their experiences here.
My experience with ATAC-sequence... -
ATAC-seq in mouse cell lines
Hello,
This is my first post. I have done multiple ATAC-seq libraries on human cell lines with no problems. Now I'm doing some ATAC on mouse lines.... -
ATAC-seq (Read1/Read2/Index Sequencing Primers?)
Hi,
We recently prepared samples for ATAC-seq using primers from the Buenrostro et al paper.
Ad1_noMX: AATGATACGGCGACCACCGAGATCTACACTCGTCGGCAGCGTCAGATGTG... -
Normalization, peal calling and differential analysis of ATAC-seq read counts
[content deleted - posted prematurely - I want to rephrase and make the question more clear]Last edited by anton.kratz; 07-21-2016, 01:58 AM. -
ATAC - sequence processing pipeline
Hi,
I'm very new to this sequence analysis.
What do people usually use for ATAC sequence analysis? Is there a user-interface type... -
Sub Nucleosomal open chromatin regions
Open Question:
Has anyone identified interesting sequence data from the sub nucleosomal size range, smaller than 150 bp.
:roll...
