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Read depth differs between bcftools and bam-readcount
We are analyzing bam files using bam-readcount and bcftools + mpileup, and comparing the reported level of coverage at specific sites in the genome. We... -
bam-readcount warning
hi everybody,
i am using bam-readcount to filter out false positives from snp calling.
i am getting (sometimes almost 5million)... -
unalble to clone repository for bam-readcount from github
Hi all,
I am using varscan somatic and i need to use the fpfilter for which I need read count from bam-readcount program.
When...Last edited by ashwinipatil; 03-14-2013, 11:35 PM.
