Hi all,
I am having some issues interpreting the output from the bamtools stats command. I am working with paired end RNAseq data generated...
6 results in 0.0021 seconds.
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Paired-end RNA-seq: large discrepancy in number of forward versus reverse reads
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freebayes with ogap
Hi !
I am trying to use freeBayes for variant calling and run into problems with the example provided in the freeBayes package.
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Filter reads by mappability, unique reads, not more than 1 mismatches
Hi all,
I am working with ChIP-seq data and want to filter the reads with the following criteria: (A) mappable reads; (B) unique alignments (most... -
Error in Sam to Bam Conversion
Dear all,
I want to convert Sam file into Bam. I am using command $ samtools view -b -S -o bowtie.glob.bam bowtie.glob.sam
but... -
BAM speed: i/o, uncompress, etc.
Is anybody familiar with the relative speeds of .bam file i/o and decompression? My algorithm is bottlenecking when I try to load reads from a .bam... -
SGA preprocess error, read ids
SGA preprocess is giving me the following error:
Warning: Pair IDs do not match (expected format /1,/2 or /A,/B)
Read1 ID: HWUSI-EAS558R_0015:7:26:4067:7956#0/1...
