Dear all,
I have a question concerning a multiple factor analysis with a batch effect reflecting the day of the library preparation (2 dates)....
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DESq2 lrt with multiple factors and batch effect
Last edited by krausezuhause; 01-25-2017, 05:09 AM. -
Complete genomics data analysis, pipeline version differences and batch efffect
I am working with Complete genomics data from pipeline version 2.5. I need to add 1000 genome data to my sample and make a multigenome vcf file. Since... -
Batch effect help
I am attempting to analyse RNA-seq data using either edgeR or DESeq2 to determine differentially expressed genes. The experimental conditions are as follows:... -
Batch effect in Methylkit and SVA
Hello!
I have 6 RRBS samples that I am analyzing in MethylKit. After looking at the clustering and PCA plots it seems that there are batch... -
WGS batch effects
Hi All,
I'm relatively new to whole genome sequencing, and have a background in 16S based typing of bacteria using NGS. I am collecting...
