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Separating reads from different organisms
My RNAseq data contains reads from two different organisms (a host and a pathogen). I wish to separate these reads so I can work on both species separately....
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Finding reads shared between 2 bam files
Hi
I have mapped bisulfite converted HiSeq reads separately to in silico converted forward & reverse strands so have files
...Code:sample.forward.bam
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Genome coverage
How do you calculate the genome coverage for a sequenced genome?
I have the BAM file for my genome, and I have calculated the read depth at each...Last edited by bioinf newbie; 02-15-2012, 01:01 PM.
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BED Tools Tutorial
Sorry I'm a total beginner in bioinformatics and really need some help.
I'm on a mac and so far I've managed to install xcode and therefore...