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Counting the number of paralogues for mouse genes gives me the wrong frequency
I am trying to count the number of paralogues for the mouse homologues of the human protein-coding genes using BioMart. But for example in the 'PLIN4'...
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biomaRt not connecting behind proxy
Hi!
I am facing an issue with biomaRt.I have tried posting this on Bioconductor support as well. I'm working behind a proxy and have modified...
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What happen to Ensembl biomart website?
I just can not download the result file. It shows network error when I download something. Sometimes it sucess sometimes it fail. Anyone knows?
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problem with biomart---give 0 results
Hi everyone:
I'm trying to convert ensembl-peptide-id to GO-id with biomart. However, when I was using the following command to run it,...
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Some miRNAs in public database are in strange coordinates. Do you know why?
Hello,
I am downloading miRNAs of mm9 (NCBIM37) from BioMart Portal.
And if you select miRNAs with "known" gene status...
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finding promoters using ensembl biomart
Hi,
I have found the upstream promoter of length 200 for some genes using Ensembl Biomart. But my supervisor asked me to find 10 promoter...
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Get upstream sequence with biomaRt
Hi Im trying to get 100bp upstream of some genes from a.gambiae. Im using biomaRt and my query looks like this:
vector<-useMart("vectorbase_mart_13",dataset="agambiae_eg_gene")...Last edited by omiguele; 10-01-2012, 01:37 PM.