Hi everyone:
I'm trying to convert ensembl-peptide-id to GO-id with biomart. However, when I was using the following command to run it, I got 0 results.
Here are commands I was using:
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
id_list=c("ENSP00000298510","ENSP00000474109")
trans_id=getBM(attributes=c("ensembl_peptide_id","entrezgene","go_id","name_1006","definition_1006","namespace_1003"), filter="ensembl_peptide_id", values="id_list", mart=ensembl)
Could someone tell me what cause the problem please?
Thanks a lot~
I'm trying to convert ensembl-peptide-id to GO-id with biomart. However, when I was using the following command to run it, I got 0 results.
Here are commands I was using:
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
id_list=c("ENSP00000298510","ENSP00000474109")
trans_id=getBM(attributes=c("ensembl_peptide_id","entrezgene","go_id","name_1006","definition_1006","namespace_1003"), filter="ensembl_peptide_id", values="id_list", mart=ensembl)
Could someone tell me what cause the problem please?
Thanks a lot~
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