hello everyone,
I'm new for blast2go using. I have basic question. I try to use create workflow and when I input fasta file, why it can...
19 results in 0.0038 seconds.
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blast2go mapping problem
I'm using blast2go to find GO mappings and annotations by importing protein sequences and their blastp hits, rather than running blastp within blast2go.... -
Is blastx reliable enough to annotate transcripts from RNA-seq?
Hi everybody!
I am a newbie on in silico functional annotation of transcripts assembled from reads produced by RNA-seq. My doubt is about... -
Announcing fastannot NR-based annotation service
Hello,
We are pleased to announce our new service fastannot, a cloud-based annotation service which aims to eliminate the bottleneck of... -
A problem about BLAST2GO
Hello,everyone!
Recently, I was performing the analysis of transcriptome. I want to perform GO enrichment analysis using BLAST2GO. But when I run... -
BLast2GO config for local WWWBlast server. What am I doing wrong?
Hi, I have a local www-blast server running that I'm trying to query through Blast2GO to speed up some annotation. I've followed a couple of guides that... -
Generate .xml file from BLAST (Blast2Go)
Hello,
I need to generate an .xml file from BLAST starting with a list of genes (currently in .txt format). I need this to use it as input... -
Directly analyze GO numbers
I want to perform a gene ontology analysis on a list of significant genes using the GO numbers directly and not the sequences/gene IDs.
... -
finding novel proteins from denovo assembly
hi all,
we are planning to compare two closely related plant species of same genus, but it is non-model plant. Our idea is to compare both... -
Blastn Results - analysis
Hi Everyone,
I have done some blasting on a draft genome that I assembled de novo(~300,000 contigs) and now I want to analyze the results.... -
Gene Ontology analysis tools
Hi Everyone,
I desperately need your expertise advise on this
I have a assembled a genome de novo, and I would like to... -
Is there any method to blast in other databases in blast2go program? help!?
I have about 300 sequences to blast and analys with blast2go.
BUT, In blast2go, I can only blast several DBs in the option list, can i add another... -
Conversion file .dat (Blast2GO) into GOA file
Hello everybody,
I have a old Gene Ontology file from Blast2GO (.dat) made by a previous collegue and I would like to convert it in a GOA... -
Blast2GO problem with .dat saved files
I have a .dat file that when I open it in blast2go it has 50.000 sequences... i run mapping, and in midle of the run I save the .dat file... then I close... -
Help plz. Cannot get blastx XML output for analysis of de novo aphid transcriptome.
Hello,
I cannot seem to get blastx to run when the output format is XML. I need the blastx XML for to GO analysis using Blast2GO. The tabular...Last edited by matthew.christenson; 04-13-2012, 05:17 AM.
