Hello,
I cannot seem to get blastx to run when the output format is XML. I need the blastx XML for to GO analysis using Blast2GO. The tabular format will be created when I enter the following commands but not the XML file:
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v._human_blastx_e-3 -evalue .001 -max_target_seqs 2 -outfmt 6 -num_threads 20 -num_descriptions 1 -num_alignments 1 &
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v_human_blastx_e-3_tab -evalue .001 outfmt 6 &
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v._human_blastx_e-3 -evalue .001 -max_target_seqs 2 -outfmt 5 -num_threads 20 -num_descriptions 1 -num_alignments 1 &
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v_human_blastx_e-3_tab -evalue .001 outfmt 5 &
Does anyone have the correct command or any suggestions?
Thank you very for your help.
I cannot seem to get blastx to run when the output format is XML. I need the blastx XML for to GO analysis using Blast2GO. The tabular format will be created when I enter the following commands but not the XML file:
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v._human_blastx_e-3 -evalue .001 -max_target_seqs 2 -outfmt 6 -num_threads 20 -num_descriptions 1 -num_alignments 1 &
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v_human_blastx_e-3_tab -evalue .001 outfmt 6 &
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v._human_blastx_e-3 -evalue .001 -max_target_seqs 2 -outfmt 5 -num_threads 20 -num_descriptions 1 -num_alignments 1 &
blastx -query diaci_adult_transcriptome.fasta -db human_protein -out diaci_adult_v_human_blastx_e-3_tab -evalue .001 outfmt 5 &
Does anyone have the correct command or any suggestions?
Thank you very for your help.
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