Hello anyone,
in the previous version of Blast DB it was possible to limit the search for blastp against the HMP (Human Microbiome Project)...
12 results in 0.0022 seconds.
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Blastp DBv5 Entrez_query Problems
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[NEWBIE] Interpretation of blastp results
I'm extremely new to this and I apologize if this question seems naive. I created a database for virulence factors and did BLASTP.
I got... -
How to tell legacy_blast.pl to look for blastp in different path?
Hello,
I was testing pantherScore.pl but then I got this :
Can't exec "/usr/bin/blastp": No such file or directory at... -
blast "returned non-zero exit status 137" error, memory problems
Hi everyone!
I'm having trouble while running blast locally for a big database, and I hope someone can help me with this.
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megan5:Parse error: java.util.NoSuchElementException
Hi,
I had got error while uploading the blastp in the new Version 5.8.6 build 13 feb 2015. But when the same blastp is uploaded in to the... -
BLASTing masssive protein sequences
Hi,
I have a transcriptome which consists of 38,000 protein sequences. Is it possible to BLAST all of them and find othologs and of these... -
Blastp for identifying genes in contigs
I have used NCBI blastp as a first step to identify predicted ORFs in my assembled contigs. My question is how to filter these results based on % identity... -
BLASTp parameter -dbsize problems (blastall -z)
Hello all,
I'm stuck at a blastp problem. I want to use the parameter -dbsize to incrementally add sequences to a blast output. Same option is available...Last edited by fireLog2; 12-11-2013, 10:05 AM. -
How to annotate genes from gene prediction
Hi,
For a completly novel genome I used a gene prediction software called SNAP (http://korflab.ucdavis.edu/software.html) and it provided me a GFF...Last edited by mictadlo; 09-17-2013, 06:00 PM. -
PSIBlast options
...Code:DESCRIPTION Position-Specific Initiated BLAST 2.2.26+ OPTIONAL ARGUMENTS -h Print USAGE and DESCRIPTION;
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Standalone Blast using Biojava
I'm trying to run blastp using some biojava packages.
I realized a class that can perform BLAST searches should be implementing the Interface... -
negative_gilist with blast2.2.25
Hi everyone,
I want to use the option negative_gilist from blastp with the version blast2.2.25.
I need to search a query against...
