Dears
I started to use bioinformatic tools recently and I am trying to run RepeatExplorer in a local instance. When I run the software...
10 results in 0.0022 seconds.
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RepeatExplorer error during blastx parsing
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Adding Blastx Hits to un-identified genes in StringTie Output
Hi all,
I've been using a general pipeline of Hisat2 -> StringTie -> Ballgown for differential gene expression analysis in a non-model... -
How to blastx on Drosophila melanogaster (taxid:7227) with raw data?
Here is some background. I am doing a preliminary study on some raw (cleaned) data. I want to find positive hits (I already used blastn to find negative...Last edited by hlyates; 05-08-2015, 06:54 AM. -
identify duplicated transcripts from blast report
I am working with a transcriptome assembled de novo. After a blastx analysis I kept the besthits (one hit per isoform) from which I isolated those annotations... -
Is blastx reliable enough to annotate transcripts from RNA-seq?
Hi everybody!
I am a newbie on in silico functional annotation of transcripts assembled from reads produced by RNA-seq. My doubt is about... -
mpiBLASTx
Hello,
This might be the wrong sub-forum, but how long should 55,000 cDNAs take to blastx using mpiBLAST? We are using 16 nodes.... -
blastall blastx filter different hits on one contig
Dear all,
I performed a blastx of some thousand contigs of size between 1500 and 5000 bp against uniref-protein database. To speed it up... -
Six reading frame question... why all contain ORF??
Hi,
So I have a conceptual question I'm trying to get my head around. I have some RNA-seq data and was trying to determine the ORF of each... -
On using BLASTX to find the protein coding frame
Hello All,
I'm using BLASTX to find the correct frame that contains the protein coding region fin the cDNA of a eukaryotic species. Because... -
Help plz. Cannot get blastx XML output for analysis of de novo aphid transcriptome.
Hello,
I cannot seem to get blastx to run when the output format is XML. I need the blastx XML for to GO analysis using Blast2GO. The tabular...Last edited by matthew.christenson; 04-13-2012, 05:17 AM.
