19 results in 0.0024 seconds.
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keep .2bit reference in memory during batch blat jobs
I succeeded to run a single blat search with standalone blat installed but would like to reduce the time of loading the reference each time when doing... -
Blat installation
Hello all,
I have been using AlingGraph to aling contigs I have to a reference genome. This program uses blat, however only supports up... -
BLAT sequence versus different versions of same genome
I used the UCSC BLAT tool to align a canine EST (DN435215, 565 bases in length) to the current version of the dog genome (canfam3). Only the first 175... -
To mask or not to mask?
Hi all,
I read several threads here and in other bio-forums about masking genome regions. There are different opinions, from don't mask... -
Comparative Genomics - BLAT
Hello,
I have assembled two related species using Abyss. However, I would like to know if there is a significant difference between the... -
parallel blat (pblat) error
Hello all,
I found modified blat for parallel running, which has -threads option.
But getting error:
blat Pcap_genome.2bit... -
BLAT settings to match is continuously on reference?
HI I have 100 bp sequences I would like to match against a reference region. Is there a way I can set BLAT so that the match (eg 80%) is continuous?... -
More efficient blat algorithm
Hello- I am using blat to match a set of sequences against the human genome. The problem is, for my particular research, I don't care WHERE or HOW MANY... -
Compile Blat for Windows x64
Hello,
I am looking for a 64bit version of the USCS genome tool Blat. I have found 32bit executable that run on windows, but I am unable... -
do number of queries affect the result of blat?
hi all!
Recently I met with a very tricky problem:
In order to ensure that the reads I mapped with bwa all have single hit on genome,... -
contig mapping reference blat psl result handle
I mapped my resequencing contigs to the reference which is the same species with blat to locate these contigs, than I want to join the ordered contigs... -
BLAT gfServer Output format
It would be really helpful if someone can explain to me the output format of the BLAT gfServer, i searched a lot but i only came up with BLAT output formats... -
PSL to BED?
How can I convert output from Jim Kent's BLAT, which is in PSL format, into BED format? -
BLAT error
make[1]: Entering directory `/home/koustav/Desktop/blatSrc/lib'
gcc -O -g -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64... -
blat: gfBlatLib.c:794: clumpToHspRange: Assertion `range->tEnd <= tSeq->size' failed.
Hello,
Running metabin's prepareinput command, which wraps blat, we get the following error:
blat: gfBlatLib.c:794: clumpToHspRange:...
