7 results in 0.0021 seconds.
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tophat2 transcriptome data files created
Hi I am providing tophat with pre-built bowtie index files, Gff files and the whole genome fasta file, but it still creates transcriptome data files and... -
bowtie with humongous reference database
Hi all,
I have been trying to find a way to build bowtie2 index for a really large reference database (>100GB) but I keep running into... -
Use Bowtie Index to get sequences using locations
We have the fasta files (obviously) for the hg19 genome, we used them to create a big Bowtie index.
I was hoping not to have to keep the... -
tophat 2.0.0 and index fasta file
Hello, I was wondering, as long as I believe that bowtie only uses its indexes to perform
the alignments, what does tophat do with the reference... -
need help to solve bowtie2-inspect error
Dear all bowtie users,
I am new in NG-sequencing. I used following command to build index of repeat masked genome by repeatmasker.... -
Tophat-fusion-post outputting no fusions
I'm trying to get fusion post running on human data, yet fusion-post returns 0 fusions. These samples had been run using a different index, with a non-zero... -
sanity error in bowtie
Hi,
Has anyone encountered:
Sanity error: sizeof(char *) <= 4 but offsLen is 1a73e30c
when running Bowtie?
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