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SymbioNGS started a topic low mapping efficiency of cd-hit-otu

in Illumina (Solexa)

10-06-2014, 03:53 AM
low mapping efficiency of cd-hit-otu

Hi,
I have an Illumina paired-end data set of a couple million ITS-2 sequences. I am using cd-hit-otu to do chimera checking, merging the pairs,...

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SymbioNGS started a topic Using cd-hit to merge paired-end data then cluster

in Bioinformatics

08-06-2014, 07:21 PM
Using cd-hit to merge paired-end data then cluster

Hi Seqanswers community,

I have a paired-end dataset of Illumina MiSeq data where each F and R reads overlap along most of the merged fragment...

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