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ChIPQC: a package for assessing quality of ChIP-seq samples and experiments
In conjunction with my colleague, Thomas Carroll, who has been looking at quality metrics for ChIP-seq libraries on a large scale (including evaluating... -
Anyone using ChIP-exo?
From the data analysis side, ChIP-exo (PMID: 22153082) looks much better than standard ChIP-seq - not because of the fine resolution (who really cares?),...Last edited by jwfoley; 12-05-2013, 12:29 PM. -
CexoR: peak-pair calling in ChIP-exo data with replicates
Dear bioinformatics community,
If you are producing of analyzing ChIP-exo data (Rhee HS, Pugh BF, 2011, Cell 147:1408-19) with replicates,...
