Hi, I'm using CLC Main Workbench and need some advice on using the search facility.
I have a local Blast database generated from genome contigs,...
15 results in 0.0030 seconds.
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CLC main workbench: search local BLAST DB field 'name'
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CLC Bio vs. Trinity for de novo transcriptome assembly
Hi there,
I have some questions regarding CLC Bio vs. Trinity for de novo RNA seq assembly. When I was told how to process my data by a postdoc...Last edited by nurgling; 04-08-2017, 12:07 PM. -
Best Bioinformatics workstation?
My company wants to buy a bioinformatics workstation. I am looking at Knosys, Bina, CLC Bio and Ayrris. Does anyone here have one of these systems? What... -
Experienced Bioinformatics Field Application Scientist for EMEA region (Europe, Middl
Location: Anywhere in Central Europe or the UK, home-office based
CLC bio, a QIAGEN Company, is an established world-class bioinformatics... -
Comparing the quality of de novo assembly from two runs' data
We are using Miseq to sequence microbial genomes (~5Mb). In the first run (1#), library containing 12 samples were sequenced, and 6 samples were sequenced... -
splitting big paired fastq files
Hi there,
I do my 'bioinformatic' work in CLC. Now I sit with many (30) large files with paired end reads (~10GB each direction) and my computer... -
Which Sequence aligners to use?
Hello wise people,
I'm trying to align a sequence of a gene that is present in two related species. Each of the genes in either species... -
Detecting SNPs, SNVs using CLC genomics wqorkbench
Hi everyone!
I am quite new to this field, and as such have a lot of questions but I don't know how to frame it...so please excuse me as... -
CLC BIO for detecting indels in ION Torrent PGM data
Hello everyone,
I was wondering if someone has some experience with using the CLC BIO genomics workbench to call indels in ion torrent... -
Tophat + Cufflinks vs. CLC Bio
Dear all,
I'm currently analysing RNAseq data (Illumina paired end, read length 101 bases) in order to investigate different cancer stages.... -
SNP detection CLC Bio
Hi everyone,
I found in the literature that when you do SNP detection in human exome data, you expect approximately 20,000 SNPs
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CLC bio - GATK
I have been using CLC bio for over a year and quite happy with the analysis results so far. I also find GATK very useful. It is just painful to export... -
CLC Genomics Workbench goes hand in hand with Ion Torrent data
This week, in an independent experiment, Dr. Nick Loman from the University of Birmingham, looked at de novo assembly of E.coli data from a single run... -
Annotation of NGS data with CLC Bio
Hi there,
Has anyone used CLC Bio (or can it be used) to annotate complete genomes or large contigs obtained from either de novo assembly... -
EdgeBio Delivers End-to-End Next Gen Sequencing with CLC bio
EdgeBio Delivers End-to-End Next Gen Sequencing with CLC bio
At the inaugural Beyond Sequencing conference in San Francisco, EdgeBio introduced...
