Header Leaderboard Ad

Collapse

Detecting SNPs, SNVs using CLC genomics wqorkbench

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Detecting SNPs, SNVs using CLC genomics wqorkbench

    Hi everyone!

    I am quite new to this field, and as such have a lot of questions but I don't know how to frame it...so please excuse me as I display my ignorance

    I have the clc genomic workbench software and I plan to use it to analyze some data from a fly (insect)species. This species isn't studied a lot yet, thus there is no reference genome to compare my results with. However I want to compare it with insect species that already have a reference genome eg D.Melanogaster.

    My question is, what steps should I take (using clc's features) from beginning to end so as to reach the step of looking for the variants? I know clc has features like trim sequences, mapping, de novo assembly, variant detection, annotating variants etc....

    Any ideas/suggestions will be much appreciated

Latest Articles

Collapse

  • seqadmin
    A Brief Overview and Common Challenges in Single-cell Sequencing Analysis
    by seqadmin


    ​​​​​​The introduction of single-cell sequencing has advanced the ability to study cell-to-cell heterogeneity. Its use has improved our understanding of somatic mutations1, cell lineages2, cellular diversity and regulation3, and development in multicellular organisms4. Single-cell sequencing encompasses hundreds of techniques with different approaches to studying the genomes, transcriptomes, epigenomes, and other omics of individual cells. The analysis of single-cell sequencing data i...

    01-24-2023, 01:19 PM
  • seqadmin
    Introduction to Single-Cell Sequencing
    by seqadmin
    Single-cell sequencing is a technique used to investigate the genome, transcriptome, epigenome, and other omics of individual cells using high-throughput sequencing. This technology has provided many scientific breakthroughs and continues to be applied across many fields, including microbiology, oncology, immunology, neurobiology, precision medicine, and stem cell research.

    The advancement of single-cell sequencing began in 2009 when Tang et al. investigated the single-cell transcriptomes
    ...
    01-09-2023, 03:10 PM

ad_right_rmr

Collapse
Working...
X