Reposted from Library Genertation Forum, where I somehow managed to mispost it...
Newer generation Illumina platforms with patterened flowcells...
27 results in 0.0024 seconds.
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Clonal amplification/ Kinetic Exclusion parameters
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Gene cluster identification using gff file
Hello everyone.
I have a list of genes. I want to know which of these are separated by nomore than eight genes (not present in the gene list)... -
Running REPET on a single machine
I'm trying to use REPET (v2.2) TEannot on a single machine instead of on a cluster.
There is a way to parallelize subprocesses anyway?... -
Help with REPET (TEdenovo, TEannot) on HPC cluster, MySQL not on all nodes
I'm trying to use REPET v2.5 in a cluster environment using TORQUE. TEdenovo.py automatically submits jobs and I want to know how to control which nodes... -
Maximum # of copies in a cluster?
Hi all,
I am just wondering why the # of DNA copies in each cluster is capped between 1000-2000.
Is this just due to the... -
pbl to run hisat2 on a computer cluster with hg19
Hi,
I want to map RNAseq data (from 10 to 30 Go, single and paired-end) on complete human genome with hisat2. To do that, I use a cluster (15 nodes,... -
UC Irvine HPC Admin
Hi All,
I'm part of UC Irvine's Research Computing Support group and we're looking to expand our group. We've won a 2 yr NSF CyberInfrastructure...Last edited by hjmangalam; 01-20-2016, 02:50 PM. -
Why isn't corset giving me output?
Hi,
I am a Ph.D student and this is my first time doing a differential expression study. I am having an issue with corset and was wondering... -
Introduction
hi all
I am Momina and I am working on TILLING and exome capturing
for analysis of sequencing results I am learning cluster
I am... -
TBLASTX with nt database and PBS PRO job scheduler
Hi I'm wondering if someone might be able to help.
I'm attempting to do a TBLASTX search with 5 query sequences (each about ~1kb in size)... -
Which metagenome assemblers are capable of efficient running on clusters?
Hi, I am trying to choose a metagenome assembler that would be able to run efficiently on a cluster (utilising cores from different nodes and using shared... -
Running Blast+ on multiple nodes on a cluster -- what is the best way to that?
Hi, I have been recently granted access to the HPC cluster of my university. I am going to run several blastx searches (Blast+ version, not legacy blast)... -
cluster and cutoffs using Mothur
Hello,
I've been using QIIME and Mothur to analyse different sets of 454 data, and this is a little off topic, because it's related to... -
Problem with Trimmomatic: will not acknowledge commands
I am trying to use the program Trimmomatic to removed adapter sequences from an Illumina paired-end read over a computer cluster. While I can get the...Last edited by gwilymh; 07-18-2014, 10:08 AM. -
Running Tophat/Cufflinks on a cluster with *Multiple* nodes
Hello,
I have access to a computer cluster made of 44 nodes. Each node has 12 cores and 48 GB ram. The main problem is that jobs have a maximum...
