44 results in 0.0032 seconds.
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Merging CNV data with Mutation data and running on MutSigCV
I am trying to find the most significant altered genes and I was thinking of using only 1 tool for significance test which is MutSigCV instead of MutSigCV... -
Webinar on DNA-Seq data analysis- Case studies
Webinar on DNA-Seq data analysis- Case Studies
DNA-Seq data can be analyzed and visualized using an extensive workflow in Strand NGS software.... -
CoNVaDING: Single Exon Variation Detection in Targeted NGS Data
CoNVaDING (Copy Number Variation Detection In Next-generation sequencing Gene panels) is designed for small (single-exon) copy number variation (CNV)... -
Need help understanding what "b-allele" refers to
I'm trying to work with Canvas to find Copy Number Variants in human data. I would appreciate if someone clarified what this input is supposed to be:... -
CNV detection with single-read data (bacterial genome)
I am planning to do a CNV calling for the first time and I've got Illumina single-read data (50bp). Libraries were not sequenced in paired-end because... -
CNV analysis on Illumina NGS data with PLINK or other toolsets
I am looking to work with CNV calls made from WGS data by Illumina's 'new' Canvas & Manta tools. Has anyone used the standard PLINK approach for downstream... -
XHMM and Ion Torrent
Hi,
I'm trying to use XHMM to detect CNV with BAM files from PGM Ion Torrent. I'm using the guide on http://atgu.mgh.harvard.edu/xhmm/tutorial... -
XHMM and PLINK/Seq problem
Hi!
I'm trying to use XHMM for CNV detection but I have a few problems:
1) I'm following this quide http://atgu.mgh.harvard.edu/xh... -
Error in Bam with Freec Control
Hi all!
I'm looking for information with errors in free control. My problem is the next:
Freec/prueba/x.bam read in 216 seconds [fillMyHash]... -
CNV and Ion Torrent
Hi! I work with Ion Torrent for detect some mutations in 2 specific genes: BRCA1 and BRCA2 (so I sequence just these regions), but the problem of this... -
Copy number analysis tool
Looking for efficient copy number analysis tool. I would generate data on ~100 target genes only. I am expecting significant copy number alteration in... -
Cindy007 started a topic Saliva DNA used for Nimblegen EZ target capture, resulting in inaccurate CNV estimatein GeneralSaliva DNA used for Nimblegen EZ target capture, resulting in inaccurate CNV estimate
Hi all:
We deal with some DNA that are extracted from human saliva and blood specimen for target region capture(Nimblegen EZ choice custom panel)... -
PennCNV run error (Can't exec detect_cnv.pl) Linux
I am trying to get PennCNV working on my computing server. Here's what I've done, per this document: http://penncnv.openbioinformatics.org/en/latest... -
CNV detection tools for non-human genomes
Hi all,
I'm very new to the world of genomics and CNVs so forgive me if my question is a bit basic.
I will be looking into detecting... -
CONTRA error messages (need urgent help!)
Hi,
I am using the tool CONTRA, and getting some error messages as below:
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Process Process-1:
Process Process-2:...
