We've added a few more workshops to our schedule! Two upcoming introductory workshops will help you get off to a good start.
Introduction...
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New workshops from UC Davis Bioinformatics Coreworkshop
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Last chance to register for online RNA-Seq Workshop June 1-4
The Bioinformatics Core at UC Davis is offering our popular RNA-Seq analysis workshop online. Next week, join us for a mixture of lecture-based instruction... -
in silico PCR benchmarking
Dear community,
I wonder whether anybody ever did a benchmarking of in silico PCR tools? I couldn't find any benchmarking so far.
Are there... -
Downloading 'RunInfo Table' from SRA Run Selector
Hello,
I would like to download the metadata for a given BioProject from the SRA. I am able to get exactly what I need by hitting the download... -
How to start a new column after every nth row?
Hi have a file(comma separated) with 3 columns. I want to start new column after every 4th row
Input:
col1,col2,col3
1,disease1,high... -
Qiime Ubuntu Command Line File Name Code?
After running multiple_join_paired_ends.py on my 600 Illumina MiSeq files, the output leaves each sample in individual folders. The folder has a unique... -
Course: Introduction to Linux and workflows for biologists
Dear all,
we still have a few spots left for the course "Introduction to Linux and workflows for biologists".
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Command Line tool or library to work with AB1 files
Hi All.
I have zero experience with sequencing or sequencing files, so please excuse if I ask something stupid
I just... -
Parsing a MEGAN file by command line
Hi, I have a quite large RMA file (about 40 GBs), and every time I try to open it, my (poor little) PC freezes. I was wondering if there's a way to parse... -
Help getting fastq_filter.py working on command line?
I want to use galaxy's fastq_filter tool on the command line.
Basically, I already know what the inputs are required by fastq_filter... -
Fetch fastqs from basespace with command line
Dear seqanswers community,
I'd like to know if anyone of you ever downloaded fastqs from basespace from the command line? If so, I'd really appreciate... -
Way for putting as filename the first line of the file
I have 1200 fasta file which are named x*. Does anybody know how to change the name of the file so that the new name is the first name of the file itself?... -
Haploview tag snp command line
Hi
I want to define haplotype blocks with haploview. I am familiar with tagger algorithm but I want to select SNP in haplotype blocks.... -
using blast+ for remote blasting
Hi I'm trying to run a remote blastn search from linux command line.
Here's my working syntax for doing this with blastcl3, which is now deprecated:... -
Command Line BLAST for specific genome using TAXID
I am using command line blast in MS-DOS and I can easily use it for NCBI database NT. My problem is in doing BLAST for a FASTA file against a specific...
