Hello All,
I have got a fasta file containing a list of contigs which were obtained through transcriptome analysis. Now, I want to find...
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Identifying genes from contigs
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de novo assembly using velvet and Amos
Hi all,
I am newbie in NGS data analysis and first task in it come to me is de novo assembly. I have plant mitochondrial genome to assemble... -
Question about Delta-Filter for MUMmer
I'm trying to associate some genomic contigs with one of several references using Mummer. What I can't seem to figure out is how to successfully remove... -
Filtering Contigs by Coverage
Hi all,
I have a dataset where I assembled sequences into contigs and would now like to filter the contigs by coverage. My goal is to... -
Bam Output Mismatch By Contig
I've been looking for something that extracts the %mismatch by contig from a .bam file. (Not unlike the left navigation panel in Tablet does automatically.)...Last edited by crkessen; 06-05-2013, 01:45 PM. -
Does anyone do contig analysis
I posted a similar question in the General Forum a few weeks ago but didn't get any responses. Are there any good libraries for programmatic contig analysis...
