26 results in 0.0023 seconds.
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How to conversion of MetaCyc Ids to BiGG ids in metabolic model?
Hello, I made metabolic model by Cobrapy. For addition of unique reactions I used RAVEN tool to make metabolic model so later I could combine all of these... -
LiftOver h19 to canFam3
Hi all,
I am trying to convert hg19 coordinates to canFam3 coordinates ( in *.bed format obviously) but liftOver does not seem to work... -
TCGA gene annotation conversion for RNA-seq datasets
Dear all,
I downloaded some RNA-seq datasets from TCGA but I am not able to convert the gene ids to the current ensembl annotation release.... -
GATK multisample vcf to BayeScan input
Hi all,
I am trying to convert a "multi-sample (population)" vcf file from GATK obtained using a "joint genotyping workflow"... -
FASTA + FASTQ --> "FAST(q)" + FASTQ
I need some help out here with an actually not that difficult task and useful to my field of research. Unfortunatley I cannot find a tool which makes... -
Birdseed to VCF
I have a lot of birdseed files (from TCGA) and I need to convert them to vcf format. Anyone know of a good script I can use? -
Getting genbank annotation file from JGI
Hi All,
I would like to extract the genbank or (embl) annotation file from genomes sequenced at JGI. At JGI you can download the annotation... -
Testing bcl2fast
Hello everybody!
I'm new at the NextSeq world, my lab just bought a new machine some weeks ago and now I will be responsible to set up... -
Bismark: Problem with coverage2cytosine
Hi all,
I want to add the strand information on the methylation calls from bismark v0.13 by using the coverage2cytosine script.
... -
convert gff to embl/genbank
Dear forum members,
I want to convert gff file to a genbank or a embl format.
Please suggest appropriate for it.
I have Bioperl...Last edited by bio_informatics; 02-06-2014, 11:03 PM. -
Converting RNA-Seq bam in fastq
Hi everyone!
I have to convert some RNA-Seq bam files into corrensponding paired-end fastq files.
I tried to use "samtools view"... -
Trying to convert embl to fasta: problems with Emboss 6.5.7
Hi, everyone,
and Happy New Year.
I am trying to convert some embl files to fasta using EMBOSS 6.5.7. The problem is that the... -
Converting .sgr to .wig
I have a number of data files all in the SGR (.sgr) file format. However, I need them to be in WIGGLE (.wig) format for some computational analysis. Can... -
denovo2 conversion pseudo-base for base
in the denovo2 pipeline, the conversion of pseudo bases for bases is realized in this line: system("cp $outdir/velvet/contigs.fa $outdir/contigs.de");... -
hg19 to Broad b37 coordinate conversion
Hi,
We'd like to convert hg19 coordinates to Broad's b37 reference coordinates. For example UCSC's "Known Genes" annotations can only...
