Hello everybody,
It is my first time working with cancer genomes and I have some doubts. I found this study in which they provide a lot of...
15 results in 0.0022 seconds.
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Using Copy Number Alterations detected in other studies for the same tumor cell line
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Recommendations for CNV calling algorithms/programs to benchmark
I want to benchmark the time/resource use and breakpoint accuracy of CNV callers on multiple individual NGS data at 30x-100x coverage at specific CNVs.... -
Best practice for preprocessing the bam file for copy number estimation
Hi all,
There are known limitations involved in the copy number estimation from exome sequencing (Tumor/Normal).
For instance...Last edited by ty23991; 03-21-2016, 12:07 PM. -
Live webinar on Copy Number Detection in Inherited Disorders and Somatic Cancer
Free live webinar on 'Copy Number Detection in Inherited Disorders and Somatic Cancer' on 25 June, 2015
Session 1: 25 June; 2:00 PM IST (1:30 AM... -
ONCOCNV: a method to extract CNAs from amplicon (or targeted) sequencing data
We are happy to present ONCOCNV, a method to detect copy number alterations in amplicon or targeted sequencing data. The method can be applied to exome-seq...Last edited by valeu; 02-10-2015, 09:34 AM. -
CNVkit: Copy number detection and visualization for targeted sequencing using off-tar
CNVkit is a software toolkit to infer and visualize copy number from targeted DNA sequencing data. It is designed for use with hybrid capture, including...Last edited by etal; 02-04-2015, 09:41 AM. -
DNA Copy Number
Hello.
I thank you in advance. I am just interested in finding the DNA copy number from whole DNA sequencing.
note, i am... -
Trying to use OncoSNP-SEQ for CNV
Hi guys,
Does anyone have experience using OncoSNP-SEQ?
It's a somatic copy number alteration detector, geared toward tumor-normal... -
CNV and SV analysis of Complete Genomics data
Any suggestions for tools/pipelines to identify CNVs and SVs from Complete Genomics data? Anyone with any experience doing this?
Has anyone... -
Complete Genomics CNVs and SVs
Any suggestions for tools/pipelines to identify CNVs and SVs from Complete Genomics data? Anyone with any experience doing this?
Has anyone... -
Probability of Occurence
How do I determine the if the overlap of genetic mutations, ex: copy number variants (CNVs) with a particular set of genomic regions is more than expected... -
RUbioSeq: a suite of parallelized pipelines for exome variation, CNVs and Bis-Seq
RUbioSeq has been developed to facilitate the primary and secondary analysis of resequencing projects by providing an integrated software suite of parallelized... -
RUbioSeq: a suite of parallelized pipelines for exome variation, CNVs and Bis-Seq
RUbioSeq has been developed to facilitate the primary and secondary analysis of resequencing projects by providing an integrated software suite of parallelized...Last edited by gonvader; 05-06-2013, 07:03 AM. -
how to obtain copy number info in an exome sequencing data analysis pipeline
Hi,
I'm new to exome sequencing data analysis, and I'm puzzled by the fact that the tool packages I have (GATK, samtools) only output... -
CONTRA test files available now
For those of you who have problems running CONTRA for copy number analysis over your exome / targeted resequencing data, I've now made a couple of bam...
