18 results in 0.0023 seconds.
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Examining possible extraneous variables in RNA-sequencing data
I have an RNA-sequencing dataset with 48 samples. I have a list of several possible extraneous variable values for each of the 48 samples. Some of these... -
Statistical analysis gene expression correlation
Dear all,
I've got a zinc finger protein (znf479) that binds on 920 genes in the brain. We hypothesize that the binding of this protein... -
RnaSeq vs Microarray correlation
Hi all,
I have an experiment with 80 samples both of them run with microarray and RnaSeq. I want to correlate the results between the two... -
correlation analysis on gene basis
hello every one,
as i am learning RNA seq analysis so can anyone told m how to calculate correlation among 3 biological replicates on... -
Different dendograms for correaltion heatamp and distance heatmaps for RNAseq samples
Hi,
I am new to analyze the RNAseq data. I have 6 samples (3 Controls and 3 treated) for which I would like to find how similar/dissimilar... -
Finding the Similarity/dissimilarity of RNAseq samples using correlation
Hi,
I am working on RNAseq data for 8 samples which biological duplicates. I want to find how close the samples are with respect to each... -
Finding Tripartite Data Groups for microRNA-TF-Gene Regulatory Circuits
I'm pretty new to the world of scripting and have a problem in my research lab that, if a script could be written, would have days worth of manual labor... -
Correlation between library construction protocols
Hi,
We've done some experiments in out lab and from the same RNA constructed libraries using two different protocols. To our surprise the correlation... -
Correlation Plots
Dear All,
Im am working on a comparison study, I used Limma and DESeq to get the DEGs at 3 different timepoints, 13989 genes.
Microarray... -
Correlate expression levels with phenotypic measure?
Dear all.
I've been spending lots of time searching for an answer to this question, going through papers and discussing with people.
... -
Within Sample Correlation of 2 genes - Rna-seq
Hi Guys,
I am doing some differential expression analysis of rna seq data using deseq2 . I have 12 different samples and i am using the... -
[n00b question] best way to make whole genome windowed coverage correlation?
Hi everyone
I have three samples that i would like to compare for differences in coverage. Right now the data is in .bed files. I'd like... -
Replicates correlation for differential expression
I have miRNA seq experiment with two conditions; (i) Asthma patients (treatments) and (ii) normal (controls). There are 9 human patients and 6 normal...Last edited by seq_finder; 11-22-2013, 07:44 AM. -
Methylation and Expression correlation
I have 3 samples and I am doing a analysis on 2 samples to identify correlated/anticorrelated genes.
I have identified some differentially methylated...Last edited by balaji; 09-16-2013, 12:26 AM. -
How to normalize the RNA seq data for the purpose of correlation analysis
For the purpose of finding differentially expressed genes, there are methods such as DEseq and cuffdiff. It was said that DEseq is better choice for this...
