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spabinger · 02-29-2016, 08:58 AM

Hi,

I am currently analyzing a RNASeq experiments with 2 conditions. Each condition has several biological replicates and each replicate...

meghavarshney · 07-02-2015, 04:45 AM

hii everyone,

i was working with this package so i got some error

Code:

> library("GenomicFeatures")
> testFile

...

batel · 02-17-2015, 01:08 AM

I have a lot of BAM files (from CCLE database), and I tried counting them using featureCounts.
Some of the files works great, but many(!) of them...

evenstar · 02-10-2015, 07:00 AM

Hi,

I am trying to run DESeq2 using the "Differential analysis of count data ~ the DESeq2 package provided in the bioconductor website....

dena.dinesh · 11-13-2014, 06:22 AM

Hi

I have my .bam files sorted and indexed for my samples. Later I used the samtools idxstats to obtain the number of mapped and unmapped...

jyu429 · 10-17-2014, 08:23 PM

Hi,

I have a sam file and I want to count how many queries mapped to a specific reference in the reference file. Is there a simple way...

Bruno_Lages · 09-16-2013, 07:19 AM

Hi,

I am trying to find information on time-course analysis of sequencing count data (eg, RNA-seq). I was told the latest version of edgeR...

a_mt · 04-28-2013, 09:57 PM

Hi all,

I have time series mRNA-seq data but without replicates.
I have some doubts about calling DE genes with DESeq.
...

stephenhart · 11-07-2011, 10:07 AM

Hello,

I have RNA-seq data, which I am trying to analyze with DESeq. My file (.csv) appears to be correct

>head(myfile)...

DESeq2 merged vs unmerged replicates