Hey,
I want to do differential splicing analysis using SplicingCompass (http://www.leibniz-hki.de/files/cont.../oeffentliche_...
7 results in 0.0021 seconds.
-
SplicingCompass: error in processing CoverageBed files
-
BEDTools coverageBed error
Recently I have been getting the following persistent error when runnng BEDTools coverageBed (ver 2.16.2 or 2.12.0):
/mnt/ngs/analysis/software/BEDTools-Version-2.16.2/bin/coverageBed:...Last edited by JMorlan; 04-04-2014, 08:41 AM. -
Using coverageBed in bedtools
Hi there,
I'm a bit of a noob and feel somewhat stupid for asking this question, but here goes...
When using coverageBed... -
Raw counts of 12 column bed file (against multiple BAM)
Hello Everyone,
I am sharing a perl script to get raw read counts from mulitple BAM files, for a given bed file. The script requires bedtools... -
Using coverageBed in Galaxy
Hi, I am new to Galaxy. I want to compute the sequencing tag coverage in defined intervals (like 0-99 bp, 100-199 bp, 200-299 bp ...) across all chromosomes... -
coverageBed -split giving incorrect output?
In the command below, coverageBed seems to be ignoring the -split argument.
$ coverageBed -split -a a2.bed -b b2.bed > out.txt
... -
coverageBed question
I try to run coverageBed like this:
/home/ay55/BEDTools/bin/genomeCoverageBed -ibam 1382_1_sorted.bam -i hg18.bed.sorted -g hg18.genome > hg18_seq.cov.txt...
