Hello everyone,
For the last few days I have been searching different forums to understand converting csfasta and qual files to fastq and/or...
13 results in 0.0028 seconds.
-
znasim09 started a topic Any video tutorial for alignment of csfasta and qual files?? Or its fastq conversion?in SOLiDAny video tutorial for alignment of csfasta and qual files?? Or its fastq conversion?
-
How to convert SOLiD BAMs to XSQ or csfasta?
Hi,
Is there a way to convert SOLiD BAMs back to csfasta or XSQ?
I know there is a tool for converting BAMs to fastq (bam2fastq).... -
Converting SRF to CSFASTA
Hi there,
I am a newbie in bioinfo, would be grateful for your help!
I ran into problem in converting the NCBI SRF files... -
Trimming of XSQ or CSFASTA files
Hello Seqanswers community:
We did small RNA analysis using SOLiD 5500 and after putting the data in Lifescope we end up with a lot of reads from...Last edited by GenomicIBK; 04-04-2013, 04:58 AM. -
FASTQC and csfasta files
Hello all,
I have some SOLID data (i.e., data_F3.csfasta and data_F3_QV.qual). As I understand, FASTQC should accept colour space data.... -
csfasta + qual to fastq
Hi all,
I am trying to convert solid csfasta + qual files to fastq. I tried using the solid2fastq (version 1.1.4) and seems accept the input... -
Script for converting fastq back to color csfasta and qual
Hello, does anyone know a script to convert a fastq file back to color csfasta and qual? The fastq file is in color (numbers, not double decoded) so I... -
Unmatched read name error when converting csfasta to fastq with solid2fastq.pl
I'm encountered with "unmatched read name" error when I converting paired SOLiD csfasta files to fastq by using solid2fastq.pl from bwa-0.5.9... -
Convert csfasta to fastq
Good day.
I would like to know is there a must to include .qual file while converting the SOLiD .csfasta file format to .fastq file format... -
Counting distinct sequences in csfasta
I have an interesting problem that I'm not sure how to approach. I have a library of randomized short inserts (21 nt) that has been sequenced using the... -
BioScope Mapping Multiple csfasta-Files
Hello
Does anybody know how it is possible to map reads from several csfasta files (e.g. different samples on different panels) with the... -
csfasta quality hard trimming do i need to hard trim the qual file?
Hi
I need to hard trim 10 bases off the csfasta file and I tried to do the hard trim and quality filter in one step (with the csfasta quality... -
Bioscope - Format mapping
Hi all,
I'm using Bioscope for mapping some resequencing samples, but I don't know which is the meaning of all the fields in the csfasta.ma. An...
