Hello everyone,
I was wondering whether its possible to make a heat map from cuffdiff output that highlights a few genes in a different...
8 results in 0.0036 seconds.
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Highlighting genes of interest in RNA-seq heatmap
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Alternative splicing summary from Cuffdiff output
Hello everyone,
I want to get a kind of summarized results for all the Alternative splicing events from the Cuffdiff output,
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Differential isoform usage with replicates using Jensen-Shannon divergence
Hello,
I'm trying to do a differential isoform usage test for a target gene g across two conditions (i=1,2). Suppose that gene g has K... -
Diff Genes from Cuffdiff output
Dear All,
i have Rna seq data drug treated in 4 diff time interval. my cuffdiff output gives more than 20000 significant genes. I used... -
cufflinks with GTF file
Hi,
If we are not looking for novel isoforms, we need to use GTF file with cufflinks ( -G GTF ).
My question is that if... -
Cuffdiff: More genes for a case when pooling normals
I am running the following SQL query using cummeRbund, in an attempt to look at the number of genes found in a particular sample:
mySql... -
Cuffdiff normalization issue
I think that CuffDiff (from cufflinks ) might have a normalization issue!
I'm using the Tophat/cufflinks/cuffdiff pipeline to analyze RNA-seq...Last edited by Kristoffer Knudsen; 02-11-2013, 06:10 AM. -
Cufdiff2 problems
Hi
I am analysing RNA-Seq data using the Tophat2/Cufflinks2(Cuffdiff2) pipeline. This has worked well for several projects, however for...
