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Rebekah_h4545 · 12-10-2016, 04:34 PM

Dear community,

I have RNA-seq data of 3 different samples, mock, condition 1 and condition 2. I have used the tuxedo suite for my analysis....

ALOK N PATEL · 11-27-2013, 03:44 AM

i have some problem related to cuffidiff output, i used this command for replicates:

cuffdiff -o diff_out -b <genome.fa> -p 10 -L CT,SS...

mattanswers · 01-25-2013, 11:50 AM

(I am transferring this question from the RNA-Seq Forum (where I have deleted it) to this Forum)

I have two sets of time series data....

xiangq · 04-20-2012, 01:19 PM

Hi guys,

I run cuffdiff with an annotation file from Ensemble like this:
-------------------
cuffdiff -o diff_out -b ../genome.fa...

kasutubh · 03-31-2012, 12:46 PM

Hi,

I know this question has already been asked (http://seqanswers.com/forums/showthr...t=13764z)..but I'm very new to these things...

Help with Cuffdiff output and CummeRbund