Hi,
I used hisat2 (2.0.5) to map 150b Paired-end reads on to the draft genome of castorbean and used cufflinks (version 2.2.1) to perform reference...
9 results in 0.0032 seconds.
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with cufflinks, can there be "0" fpkm value and yet full read support?
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Question: Cufflinks displaying "WARNING: Multi-Hit not found"
I'm running Cufflinks (2.2.1) on a set of RNA-seq alignments that I did with STAR. I'm using these options:
...Code:/home/user1/Data/Softwares/cufflinks-2.2.1/cufflinks
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Cuffdiff results with frag-bias-correct vary considerably when re-runing
Dear all,
I facing a very strange issue when running the tuxedo workflow with wheat data.
The problem is that I fail to... -
Segmentation Fault 11, cuffdiff 2.2.1
I used homebrew to download cufflinks 2.2.1 and the related packages to replicate the Cole-Trapnell paper from 2012 and have run into an issue on step... -
Small output of tophat for homo sapein alignment
Hi, everyone. I am new in the NGS technology. I need some help about tophat and cufflinks.
Currently, I want to get some assembled alignment... -
Empty output of cufflinks
Hi, everyone. I am new in the NGS technology. I need some help about cufflinks.
Currently, I want to get some assembled alignment results... -
Cufflinks runtime
Cufflinks 2.2.1 is taking a really long time. I start with 45 million 100bp paired-end, rRNA depleted, stranded reads aligned with STAR, 24 million uniquely... -
Running cufflinks without the -G or the -g option
Hi,
I am analyzing an RNA-seq dataset using tophat and cufflinks. Mostly I followed the procedures described in the Nature Protocol paper... -
Having problem while running cufflinksv2.2.1 with --library-norm-method classic-fpkm
Hi all,
I have tried to run the following:
$ cufflinks-2.2.1.Linux_x86_64/cufflinks \
-p 8 \
-o cufflinks_SRR1153278...
