Dear all,
I run cufflinks/cuffmege/cuffdiff pipeline on my data. But I have some problem on how to interpret the splicing.diff results....
7 results in 0.0021 seconds.
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Cuffdiff splicing.diff output
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Cuffdiff outputs no significant AS genes in RNA-seq analysis.
Hi All
I did my first RNA-seq analysis on A.thaliana dataset using Tophat, Cufflinks, Cuffmerge and Cuffdiff at Iplant's DE. As a beginner,... -
Is cufflinks still useful if you have a reference genome?
Sorry, the actual heading for my post should be:
If you have a high quality genome annotation, should you always still use cufflinks.... -
Assessing functional data in CummeRbund/cufflinks
Hello,
I am fairly new to the cummeRbund R-package and R.
For my research I would like to focus on functional properties between... -
Cufflinks v 1.2.0 high number of RPKM 0
I have three SOLiD human RNA-Seq libraries which I am analysing using cuffdiff. The libraries have a large number of reads which MAY be pcr duplicates... -
When to include Cufflinks/Cuffdiff -u and -b flags?
Hi All,
Sorry but I couldn't find the answer to this question anywhere!
In both cufflinks and cuffdiff, you have the... -
Cuffdiff error usr/lib64.libz.so.1
Hello, When I ran Cuffdiff, I get the following error:
cuffdiff: /usr/lib64/libz.so.1: no version information available (required by cuffdiff)...
