Hello all!
** I already posted this in the Bioinformatics forum -- I'm not sure which one it should belong to-- my apologies. Admins,...
10 results in 0.0030 seconds.
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Tuxedo Pipeline Issue - Multiple Gene Hits per Transcript, High FPKM
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cummeRbund PCA plot
Can anyone explain cummeRbund's PCA plot?
I do understand traditional PCA plots, like the one in DESeq, and cummeRbund's MDS plot, but what does... -
No significant genes in RNA-seq analyses
Hi all
I am doing RNA-seq analyses using tophat and cufflinks. I followed all the steps of nature protocol papers without any problem except the...Last edited by fahim; 03-26-2013, 07:55 AM. -
CummeRbund specify sample order, selecting specific chromosome
Hello community!
I have built a dataset of 30 individuals with varying phenotypes for whom I have complete transcriptome data for a specific... -
CummeRbund changing sample order, only examining singlle chromosomes
Duplicate post -
CummeRbund (csVolcano plot) question
Hello community,
I’m analyzing the results from an RNA-seq and I’m trying to use CummeRbund to visualize the output from cuffdiff.... -
Assessing functional data in CummeRbund/cufflinks
Hello,
I am fairly new to the cummeRbund R-package and R.
For my research I would like to focus on functional properties between... -
Q:Accessing Functional data with CummeRbund from Cufflinks
Hello,
I am fairly new to the cummeRbund R-package and R.
For my research I would like to focus on functional properties between... -
Q:Accessing Functional data with CummeRbund from Cufflinks
Hello,
I would like to evaluate KOG_class differences with CummeRbund in the cufflinks output. A file gene_exp_func.diff was created that... -
CummeRbund 2.0 readCufflinks GTF/genome build options
I'm trying to use the "transcript-structure level features" in CummeRbund made possible by including a GTF in the readCufflinks command. I'm...
