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  • Q:Accessing Functional data with CummeRbund from Cufflinks

    Hello,

    I would like to evaluate KOG_class differences with CummeRbund in the cufflinks output. A file gene_exp_func.diff was created that shows the KOG_class etc when opened in EXCEL. Maybe, my R and CummeRbund skills are too poor to work this out myself. Could anyone help assessing the properties of my transcriptome comparison on the functional.

    A more general question. Is there a manual or manuscript explaining how to conduct an assessment of transcriptome difference and find the transcripts/genes of interest?

    Thanks

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