Hi,
Could anyone please tell me how to change the FDR from default (0.05) to 0.0001 in edgeR?
et <- exactTest(y, pair=c("1","2"))...
5 results in 0.0069 seconds.
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change default FDR on edgeR
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Advanced interaction contrast in DESeq2
Hi everyone,
I am currently working on some RNA-seq data in DESeq2 and I would like to know if I can transform a specific... -
Cuffdiff results puzzling me. fpkm 350 vs 5.6 IS sig while 6 v 350 ISN'T ??
Hi all,
New to RNAseq analysis and trying to find DEGs with some PE seq data I've aligned using tophat. I just can't understand why cuffdiff... -
Differential expression analysis about 80 genes
Recently, I been worked with RNA sequencing data analysis concerning a set of 80 candidate genes. Here is my library preparation workflow, RNA was reverse... -
how to do DE analysis from closely related species with RNA-seq
Hi, all
I am working on RNA-seq data these days. The goal is to find DEGs in two closely related species. We have RNA-seq data with...
