When? June 30 - July 4, 2025
Where? Berlin, Germany
Link: www.ec...
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9th Berlin Summer School in NGS Data Analysis 2025 (June 30 - July 4, 2025) -- SUMMER IN BERLIN --
9th Berlin Summer School in NGS Data Analysis 2025
When? June 30 - July 4, 2025
Where? Berlin, Germany
Link: www.ec... -
Help with subheads featureCounts
Hi All. I am new to bioinformatics, and am trying to run subReads featureCounts to analyze RNA seq data. I am using the code below, and am in the featureCounts...Last edited by lstarr; 07-24-2022, 05:26 PM. -
Multi species RNA-seq comparison
Hi all,
I have count tables from two species. I'd like to find the find orthologous genes between the species and compare how the orthologs... -
DESeq2: resultsnames missing info available in colData
edit: retractedLast edited by glados; 05-17-2017, 12:44 AM. Reason: finally worked after multiple restarts of RStudio -
use Deseq to calculate samples partially without replicates
Hello everyone,
Recently, I tried to use DESeq to calculate the differential expression of some samples.
The samples to... -
DESeq factor design, and optimal number of samples
For the 1st question, I want to know if I should run a single factor or double factor. These samples are match normal/tumor from different patients so... -
Gene Name nomenclature
Hello all. I have a set of DE genes from a single replicate as identified by the GFOLD package. Though I am getting results which have the same gene ID... -
DESeq
Hey All,
I am working on SNPs analysis, and wanted to group my data based on presence (1) or absence (0) of SNP.s As DESeq does Binomial... -
Should I sequence un-replicated blocks in RNAseq?
Hi all,
I am designing a new experiment to sequence transcriptomes from wasps. I have 3 treatment "environments" and 4 replicate... -
Differential Expression "categorisation"
Hello!
Some weeks ago my group did an RNA-sequencing project to get information about differentially expressed genes in 2 cell types of an algae.... -
DEseq no significant genes
Hi everyone,
I'm very new to the world of RNA-seq so forgive me for my lack of knowledge.
I got some RNA-seq data from... -
Differential expression of small subset of genes from RNASeq dataset
Hello all - apologies in advance if this is a statistically naive question!
We've recently been looking at some of the abundant RNASeq... -
Assigning reads to genes in the absence of genomic annotation
I'm looking for a method to calculate read counts from SAM/BAM files that does not require an annotation file (GTF or BED files).
I've... -
DESeq2 merged vs unmerged replicates
Hi,
I am currently analyzing a RNASeq experiments with 2 conditions. Each condition has several biological replicates and each replicate... -
Differential expression analysis using DESeq for TCGA data
Hi.
I’m analysing RNA Sequencing (RNAseq) data of Breast Invasive Carcinoma cases for tumor-normal matched samples downloaded from...
