Hi all,
We’re organizing our annual Berlin Summer School in NGS Data Analysis (June 15-19, 2026), and thought it may be of interest to this...
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10th Berlin Summer School in NGS Data Analysis (July 2026, in-person, Berlin) – registration open
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10th Berlin Summer School in NGS Data Analysis (July 2026, in-person, Berlin) – registration open
Hi all,
We’re organizing our annual Berlin Summer School in NGS Data Analysis (June 15-19, 2026), and thought it may be of interest to this... -
Only 8 seats left - 1st Berlin Winter School in RNA-Seq Data Analysis (Dec 8-11, 2025)
Advance your research. Understand RNA-Seq analyses challenges and solve them yourself.
When? Dec 8-11, 2025
Where? Berlin, Germany... -
1st Berlin Winter School in RNA-Seq Data Analysis (Dec 8-11, 2025)
Advance your research. Understand RNA-Seq analyses challenges and solve them yourself.
When? Dec 8-11, 2025
Where? Berlin, Germany... -
Differential Expression analyses between species
Hi all,
The project I am currently working on involves five closely related cricket species in the same genus. I have 8 (neutral) replicates... -
Last chance to register for online RNA-Seq Workshop June 1-4
The Bioinformatics Core at UC Davis is offering our popular RNA-Seq analysis workshop online. Next week, join us for a mixture of lecture-based instruction... -
DESeq2 interaction term results differ between full dataset & subset
Hi all, hoping someone has some insight on this because I am completely stumped...
I'm using DESeq2 for differential analysis... -
best bioinformatic methods for identification of miRNAs for differential expression
Hi everyone,
I'm trying to find tools/pipelines in order to do the analysis of miRNAs from RNA-seq data, but I'm overwhelmed by the amount... -
Account for confounding factor with big effect - experimental design
Hi,
I hope this is the appropriate forum for my question, please excuse me if not.
I have a question regarding my experimental... -
long noncoding RNA DE analysis
Hi everybody,
I am looking for a method/tool/workflow to analyse the differential expression of long ncRNA in C. elegans.
After... -
How can I specify DEseq2 to only perform comparisons on which I am interested with ?
Hello all,
I am currently performing a large RNA-seq analysis from mice PBMCs. The dataset contains around 6,000 transcriptomic profiles... -
RNA-seq datasets with multiple factors
Hi,
I am looking for public RNA-seq datasets with multiple factors and preferably validation information like qPCR validation, so that... -
How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
**UPDATE**
I've migrated (aka copied) this question over to the biostars forum: https://www.biostars.org/p/244455/. Please look there for further... -
Individual-level RNA-Seq differential expression analysis with paired sample design
Hi all, I'd appreciate any thoughts that will help us with the experimental design for our project.
Our experimental design involves collecting... -
edgeR:prior.df value
Hello,
I'd like to know what prior.df stands for in edgeR algorithm and could this value be changed from default value to any other user...
