I am trying to download some fastq data from ENA.
Using the ftp links with the wget command in Linux. Something like:
wget ftp://ftp.sr...
14 results in 0.0033 seconds.
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Data download from ENA is rather slow
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Scripts to download genes
Hello everyone!
I'm new here as well as in bioinformatics area.
I need to download a loooot of genes from a specific website using... -
Single sample, more than one SRA file
Hello All,
I want to download some samples from the SRA (http://www.ncbi.nlm.nih.gov/geo/quer...i?acc=GSE22411) but sometimes a single... -
mouse or non-human cancer sequence download
Hi everyone,
I am asking for help,I need mouse or non -human cancer sequences to verify my SV detection tools,but I do not know where to download... -
Hello!!(and help)
Hi everyone !!
I'm a bioinformatic student from Barcelona, I'm trying to download rna-seq raw data of Camponotus castaneus but I can not find anything... -
MG-RAST - Efficient downloads?
Hello,
I want to download the hierarchical SEED Subsystems information for 30 metagenomes at MG-RAST. I've managed to obtain, through the API,... -
TCGA controlled data access
Hi,
I would like to download controlled access TCGA BRCA data both from tcga data portal (vcf files) and cghub (bam files).
As far as I... -
Fetch fastqs from basespace with command line
Dear seqanswers community,
I'd like to know if anyone of you ever downloaded fastqs from basespace from the command line? If so, I'd really appreciate... -
Hi-C seq data download
Hello there,
Anyone knows where to download matrix data for BOTH inter- and intra- chromosomal interaction?
If there's no... -
mouse mm9 miRNA in gtf format
Hi,
Where can i find mouse miRNA mm9 reference data in gtf format?
I know mirbase but i could only found these in gff format.
I would... -
Same experiment name = unable to download from Basespace?
Hi,
I had a run on the Miseq completed, and post-run wash performed. I then started another run, with the same experiment name as the first... -
download all available genomes by genus
Hi!
I`d like to get all bacterial genomes of some genus. There a lot of species already sequenced with a lot of strains as I can see in Genbank.... -
Newbler 2.7?
What's the latest version of Newbler and where do I get it? Is it 2.7? -
need GRCh37 database
I am trying to find variants on some bam files I got but GATK requires the exact database used for the alignment.
Apparently it is GRCh37. Any...
