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identify duplicated transcripts from blast report
I am working with a transcriptome assembled de novo. After a blastx analysis I kept the besthits (one hit per isoform) from which I isolated those annotations... -
Illumina PE reads optimal pre-processing sequence
Hello, everyone. I am trying to establish an optimal sequence of Illumina PE reads pre-processing steps and I have come up with the following protocol... -
duplicate tags tophat2
I am using tophat2 (2.0.10) with bowtie2 to map Illumina HiSeq 2000 2x100 paired-end RNA sequencing data to the human genome/transcriptome.
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Bioscope pairing pipeline
Hi
Does anybody know how to correctly use parameters in the BioScope 1.3.1 pairing pipeline?
I wanted to set
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