Thank you for reading.
I would like to know the samples of RNA-seq in Ensembl.
At present, I want to analyze RNA-seq data from primate...
27 results in 0.0031 seconds.
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About samples of RNA-seq in Ensembl database for primate and etc
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Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
We will run a free Ensembl browser workshop on the Wellcome Genome Campus on 17 October 2018.
This workshop is an introduction to the Ensembl... -
Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
We will run a free Ensembl browser workshop on the Wellcome Genome Campus on 17 October 2018.
This workshop is an introduction to the Ensembl... -
Failed connection with Ensembl VEP script on port 3337
I'm using the VEP (Variant Effect Predictor) standalone Perl script to annotate some variants, it connects to the Ensembl MySql database. I used the same... -
Survey: help define Gencode and NCBI primary transcripts
Cross-posting this here since it will be of interest. Likely to remain open for 1 week.
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...Last edited by GenoMax; 04-10-2018, 05:38 AM. -
dexseq_prepare script error with Ensembl human gtf
Hi all
I was following the instructions to analyze my RNASeq data with the DEXSeq package but I run into the following error while preparing... -
Chrom Sizes for Ensembl Reference
i want to convert BAM to BigWig for ensembl reference genome (Homo_sapiens.GRCh38.81.fa to be specific) using the following work flow.
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What happen to Ensembl biomart website?
I just can not download the result file. It shows network error when I download something. Sometimes it sucess sometimes it fail. Anyone knows? -
which is the main transcript
For a specific gene, how can I know which is the main transcript in the ensembl? there is a list of few transcripts and not always the first one or the... -
VEP variant effect predictor
Hi all
How to output the html summary AND the plain text stats file when using Ensembl's variant effect predictor script (VEP) ?
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dna, dna_sm and dna_rm which one should I use to form a blast database?
I saw there are a couple of files on the ensembl ftp website:
ftp://ftp.ensembl.org/pub/release-76...lanoleuca/dna/... -
Transcript id naming in Ensembl?
I am quite curious on the naming pattern on the Transcript ID on Ensembl. i.e.
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?db=c... -
GenomicFeatures: makeTranscriptDbFromUCSC suddenly started creating errors
I've been using the makeTranscriptDbFromUCSC function to retrieve ensembl genes from UCSC for over two years as part of our RNA-Seq expression profiling... -
Ensembl/NCBI/UCSC mouse gene annotations for cufflinks
Dear seqA community,
I'm assembling transcripts on the mouse reference annotations (*.gtf files) provided by Ensembl, NCBI and UCSC. Ideally,...Last edited by sp144; 11-30-2013, 05:46 PM. -
Ensembl gene summary question..
Newbie to here, when I go some page at Ensembl... Like this one: http://asia.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000114867;r=3:184032283-18...
