Hello
I am working in preprocessing the exome data. I need some inputs in some of the preprocessing steps. I have included the read group...
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Preprocessing exome data for germline variant analysis
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Whole Exome analysis on a 1500 € standard PC, is that possible?
Whole-Exome Analysis on a Mainstream Desktop PC
We are regularly asked what kind of computer is needed to analyze Whole Exome data. We have tested... -
Can I see the detailed information of off-target reads of sequencing on NextSeq 500?
I would like to see the off-target read details of the run on NExtSeq 500 with TruSeq Rapid Exome kit?
I know that Ihave lots of reads... -
Truseq Rapid Exome TArget Bed file's Gene Names?
İs there a way to get gene names of the Truseq Rapid exome Target Bed file whihc only includes target coordinates? -
Ion Torrent data preprocessing
Hi All,
I would like to know about which tool is good for preprocessing of Ion Torrent whole exome data?
Thanks -
Introducing Skymap: a single data matrix for each omic layer for each species
Skymap is a standalone database that aims to offer:
1. a single data matrix for each omic layer for each species that spans >200k sequencing... -
Bioinformatics analyst at the University of Virginia
Visit http://jobs.virginia.edu/applicants/...uickFind=83906 to apply.
The Bioinformatics Core in the UVa School of Medicine seeks... -
Exome data available
Does anyone know if there is exome data available from patients? I mean data to be used for variants analysis. -
Nimblegen exome, Prepairing the Hybridization Sample
Hello everyone!
Today I had a mistake in the lab during the hybridization step of "Nimblegen EZ Library SR" protocol.
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Confused about RG ID LB even after reading all posts/GATK best practices
I am getting conflicting information on how to assign RG ID, LB, PU, SM for an exome analysis I am working with.
Can someone just clarify...Last edited by Studentlost; 03-05-2016, 08:06 PM. -
Mutation/variant calling with cell-line sequencing data
I plan to use whole exome sequencing data to identify mutation events induced in a human cell-line following treatment with various reagents.
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Rat Exome Sequencing
Hi all,
Is there a commercial kit for sequencing rat exome? We just a few samples, therefore a bespoke design will be too expensive. -
merge or do not merge overlapping paired-end reads?
Dear all,
I would like to discuss with you, if it is truly meaningful to merge overlapping paired end (PE) reads from Illumina exome or whole...Last edited by evakoe; 07-20-2015, 03:05 AM. Reason: additional argument, added link to another thread -
Coverage anomaly?
Hello,
I am doing exome sequencing of non-malignant tumors on Ion Proton PI chip.
Sequencing works fine, but when
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Less SNVs with larger interval file - MuTect
Hi,
I've used MuTect to call variants on .bam files (standard procedure for exome seq, tumor vs normal) using two different interval files (both...
