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count reads across exon junctions
Suppose I have a bam file of paired-end reads and a gff file for exon locations. Is there an easy way to count the number of split reads (which can be... -
Exon-Junction mapping: re-assigning CDS-mapped reads to chromosomes
Hi,
I am working with RNA-SEQ data and want to align SOLiD reads using publicly available software. Tophat cannot handle SOLiD reads, so...
