Hello,
I am currently running MAKER version 2.31.8 using MPI but I keep getting the following error when running Exonerate:
...
9 results in 0.0021 seconds.
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MAKER Exonerate Error
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Exonerate uniref90.fasta alignment to 65MB genome
Hello,
I was trying to align uniref90.fasta (10 gb) to genome for annotation.
I have 64 GB ram with 32 core.
It is already... -
How to compare Trinity and Cufflinks results
Hi friends !
I'm trying to analyze the result of differentially expressed genes (DEGs) between the cufflinks (Cuffdiff ) and the Trinity... -
exonerate Segmentation Fault on Red Hat Enterprise Linux Server release 6.4
I compiled exonerate-2.2.0 on two different machines:
1) CentOS release 5.8 (Final)
2) Red Hat Enterprise Linux Server release 6.4 (Santiago)... -
Exonerate protein2dna:bestfit problem
Hello I'm having a problem to run the "protein2dna:bestfit" model in my 64 bit computer and under both Linux Cluster and Cygwin.
For the...Last edited by woa; 08-26-2013, 08:15 AM. -
Exonerate: filter low quality hits
hi Seqanswer,
We have transcriptome data assembled using de-novo assembly approach. Recently, we have genome sequence available, therefore... -
Annotation in GFF3
Hi,
Can anybody tell me a program to find genes by homology that generate GFF3?
I tired AAT but only show me a table... -
Exonerate GFF in Artemis
Hi,
May be this is very simple question, I'm beginner in bioinformatics.
I'm trying to run exonerate, I tested with a partial...Last edited by Daniel Fernandez; 06-06-2012, 10:00 AM. -
Help with Exonerate output
I'm doing some cdna to genomic dna alignments with exonerate but am having trouble parsing the output- not very good at that sort of thing.
I...
