I have a fasta file with many sequences, an I would like to get just the longest one (does not matter the id). How can I do that?
I would...
11 results in 0.0029 seconds.
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How to extract the longest sequence from a fasta file
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Fastest way to add Ns to variable length sequences to get uniform length
I have a fasta file with a thousand sequences with a distribution of lengths between 100 and 150bp. I would like to add Ns to all sequences whose length... -
How do I convert one file into several multifasta fasta files using perl
Hi
It's the first time I work with Perl then I don't know so much about the language.
I need a script which converts multi-fasta file in several...Last edited by iMarcelo; 05-05-2016, 10:25 AM. -
Convert paired-end, longer reads to single-end, shorter reads
Hi,
Possibly a very dumb question, but if I have a dataset of paired-end, 150bp reads, but a computational tool that is formatted to analyze single-end... -
Is it possible to create a consensus sequence from a fasta file?
Hello,
The fasta file includes DNA sequences of a target region generated from a pooled sample, is there any way to create a consensus sequence...Last edited by ssnowfox; 02-12-2015, 12:50 PM. -
Fasta name changes
I have a word file with 222 pages worth of fasta genes... that adds up. The phylogenetic program I plan to use doesn't like a long FASTA header all that... -
How can I get the sequence of each orf?
Hey guys, I'm very new of the bioinformatic world.
I'm trying to blast some data from metagenomic analysis against different database (NCBI,... -
How to append fasta files
Hi,
I have a series of snp and indels (csv format) for which I know the exact location on the the human genome (chromosome# and nucleotide... -
how to split a fasta file according to a list of gene ID
Hi ALL,
I have a fasta file and I want to split it in two two fasta files according to a list of sequence names in a text file (one seq... -
print first occurence of a line
Hi all,
I extracted ORFs from a initial fasta file and now I want to get the longest ORF for each transcript.
After having... -
454 fasta files
Hi all,
I'm a bit confused with the 454 fasta output files after a sequencing run. Below you have an example what I got. According to that my 454...
